Project

Goal

Participants

Publications

Demos

Resources and Tools

References

intranet

EU - EN - ES

Publications

See also [1]

• Iakes Goenaga, Aitziber Atutxa, Koldo Gojenola, Arantza Casillas, Arantza Díaz de Ilarraza, Nerea Ezeiza, Maite Oronoz, Alicia Pérez, Olatz Perez de Viñaspre (2018)
  A Hybrid Approach For Automatic Disability Annotation
  Proceedings of the Third Workshop on Evaluation of Human Language Technologies for Iberian Languages (IberEval 2018). ISSN 1613-073. Vol-2150. Pages 31-36.
  DIANN_paper3.pdf
  
  
• Iakes Goenaga, Aitziber Atutxa, Koldo Gojenola, Arantza Casillas, Arantza Díaz de Ilarraza, Nerea Ezeiza, Maite Oronoz, Alicia Pérez, Olatz Perez de Viñaspre (2018)
  Automatic Misogyny Identification Using Neural Networks
  Proceedings of the Third Workshop on Evaluation of Human Language Technologies for Iberian Languages (IberEval 2018). ISSN 1613-073. Vol-2150. Pages 249-254.
  AMI_paper4.pdf
  
  
• Mikel Laburu, Alicia Pérez, Arantza Casillas, Iakes Goenaga, Maite Oronoz (2018)
  Can I find information about rare diseases in some other language?
  IEEE International Conference on Bioinformatics and Biomedicine. Artificial Intelligence techniques for Biomedicine and Healthcare. Madrid (December, 2018); ISBN: 978-1-5386-5487-3; Pgs: 2102-2108
  mikel-laburu-bibm.pdf
  
  
• Rebecka Weegar, Alicia Pérez, Arantza Casillas, Maite Oronoz (2018)
  Deep Medical Entity Recognition for Swedish and Spanish
  Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine. International Workshop on Biomedical and Health Informatics. Pages 1595-1601. Madrid (December, 2018). ISBN: 978-1-5386-5487-3
  
  
• Sara Santiso, Arantza Casillas, Alicia Pérez, Maite Oronoz (2018)
  Word embeddings for negation detection in health records written in Spanish
  Soft Computing
  https://doi.org/10.1007/s00500-018-3650-7
  https://link.springer.com/content/pdf/10.1007%2Fs00500-018-3650-7.pdf
  
  
• Sara Santiso and Arantza Casillas and Alicia Pérez (2018)
  The class imbalance problem detecting adverse drug reactions in electronic health records
  Health Informatics Journal
  http://journals.sagepub.com/doi/10.1177/1460458218799470
  
  
• Aitziber Atutxa, Arantza Casillas, Nerea Ezeiza, Iakes Goenaga, V. Fresno, Koldo Gojenola, R. Martinez, Maite Oronoz, Olatz Perez-de-Viñaspre (2018)
  IxaMed at CLEF eHealth 2018 Task 1: ICD10 Coding with a Sequence-to-Sequence approach
  CLEF 2018 Online Working Notes. CEUR-WS
  CLEF2018.pdf
  
  
• Jorge Pérez, Alicia Pérez, Arantza Casillas, Koldo Gojenola (2018)
  Cardiology record multi-label classification using Latent Dirichlet Allocation
  Computer Methods and Programs in Biomedicine https://doi.org/10.1016/j.cmpb.2018.07.002
  
  
• Rebecka Weegar, Alicia Pérez, Hercules Dalianis, Koldo Gojenola, Arantza Casillas, Maite Oronoz (2018)
  Ensembles for clinical entity extraction
  Revista: Procesamiento del Lenguaje Natural, Vol 60, p. 13-20, mar. 2018. ISSN 1989-7553. DOI 10.26342/2018-60-1
  
  
• Alicia Pérez, Aitziber Atutxa, Arantza Casillas, Koldo Gojenola, Álvaro Sellart (2018)
  Inferred joint multigram models for medical term normalization according to ICD
  International Journal of Medical Informatics.
  Volume 110, February 2018, Pages 111–117
  
  
• Aitziber Atutxa, Alicia Pérez, Arantza Casillas (2017)
  Machine Learning approaches on Diagnostic Term Encoding with the ICD for Clinical Documentation
  IEEE Journal of Biomedical and Health Informatics, issue 99
  
  
  
• Maite Oronoz and Koldo Gojenola and Alicia P�rez and Arantza D�az de Ilarraza and Arantza Casillas.
  "On the creation of a clinical gold standard corpus in Spanish: Mining adverse drug reactions".
  Journal of Biomedical Informatics, 56, 318-332, 2015.
  
  
• Arantza Casillas, Alicia P�rez, Maite Oronoz, Koldo Gojenola, Sara Santiso 2016
  "Learning to extract adverse drug reaction events from electronic health records in Spanish"
  Expert Systems with Applications, Volume 61, 1 November 2016, Pages 235-245



• Sara Santiso, Arantza Casillas, Alicia P�rez, Maite Oronoz, Koldo Gojenola
  "Document-level adverse drug reaction event extraction on electronic health records in Spanish"
  Procesamiento del Lenguaje Natural, Revista no 56, 49-56.
  
  
• Arantza Casillas, Arantza D�az de Ilarraza, Koldo Gojenola, Luis Mendarte, Maite Oronoz, Javier Peral, Alicia Perez 2016
  "Deteami research-transference project: natural language processing technologies to the aid of pharmacy and pharmacosurveillance"
  Procesamiento del Lenguaje Natural, Revista no 57, 155-158.
  
  
• Rebecka Weegar, Arantza Casillas, Arantza Diaz de Ilarraza, Maite Oronoz, Alicia P�rez, Koldo Gojenola (2016).
  "The impact of simple feature engineering in multilingual medical NER."
  Coling (Clinical NLP Workshop), Osaka, Japan, December 11-17, 2016.



• Arantza Casillas, Arantza D�az de Ilarraza, Koldo Gojenola, Luis Mendarte, Maite Oronoz, Javier Peral, Alicia Perez (2016).
  "Deteami research-transference project: natural language processing technologies to the aid of pharmacy and pharmacosurveillance."
  Procesamiento del Lenguaje Natural, 57, 155-158.



• Arantza Casillas, Koldo Gojenola, Alicia P�rez, Maite Oronoz (2016).
  "Clinical text mining for efficient extraction of drug-allergy reactions."
  IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Shenzhen, China, Dec 15-18.



• Arantza Casillas, Arantza Diaz de Ilarraza, Kike Fernandez, Koldo Gojenola, Maite Oronoz, Alicia Perez, Sara Santiso (2016).
  "IXAmed-IE: on-line medical entity identification and ADR event extraction in Spanish."
  IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Shenzhen, China, Dec 15-18, 2016.


• Alicia P�rez, Arantza Casillas, Koldo Gojenola (2016).
  "Fully unsupervised low-dimensional representation of adverse drug reaction events through distributional semantics."
  CoLing BioTxtM Workshop.
  


• Alicia P�rez, Rebecka Weegar, Arantza Casillas, Koldo Gojenola, Maite Oronoz, Hercules Dalianis 2017
  Semi-supervised medical entity recognition: A study on Spanish and Swedish clinical corpora
  Journal of Biomedical Informatics, 71, 16-30, 2017.


• Arantza Casillas, Arantza Diaz de Ilarraza, Kike Fernandez, Koldo Gojenola, Maite Oronoz, Alicia P�rez, Sara Santiso (2016)
  IXAmed-IE: on-line medical entity identification and ADR event extraction in Spanish
  IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Shenzhen, China, pages 846-849. Dec 15-18, 2016. -
  


• Alicia P�rez, Arantza Casillas, Koldo Gojenola (2016)
  Fully unsupervised low-dimensional representation of adverse drug reaction events through distributional semantics
  Proceedings of the Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining .CoLing (BioTxtM 2016) pages 50?59, Osaka, Japan, December 12th 2016.
  


• Rebecka Weegar, Arantza Casillas, Arantza Diaz de Ilarraza, Maite Oronoz, Alicia P�rez, Koldo Gojenola (2016)
  The impact of simple feature engineering in multilingual medical NER
  Proceedings of the Clinical Natural Language Processing Workshop (Coling), pages 1?6, Osaka, Japan, December 11-17 2016.
  


• Arantza Casillas, Koldo Gojenola, Alicia P�rez, Maite Oronoz (2016)
  Clinical text mining for efficient extraction of drug-allergy reactions
  IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Shenzhen, China, Dec 15-18, 2016 - . Pages: 946-952.
  


• Santiso S., Casillas A., P�rez A., Oronoz M. (2017)
  Medical Entity Recognition and Negation Extraction: Assessment of NegEx on Health Records in Spanish
  Bioinformatics and Biomedical Engineering. 5th International Work-Conference, IWBBIO 2017, Granada, Spain, April 26?28, 2017, Proceedings, of the Lecture Notes in Computer Science book series (LNCS, volume 10208).